Athanasius Ultrametric

Reports / branchpoint_ensemble_selection.md

Branch-point Ensemble Selection

Generated by scripts/run_branchpoint_ensemble_selection.py.

Candidate library size K: 200 Repeats: 10 Feature subset sizes: 1, 2, 3, 4, 5, 6, 7, 8, 9, 10

One-SE selections

dataset dataset_label method subset_size_s ensemble_size_m candidate_library_size_K repeats mean_padic_loss se_padic_loss mean_exact_branch_accuracy mean_active_parameters_used mean_parameters_used mean_min_medoid_gap mean_min_stability_margin mean_unstable_folds global_min_loss_for_method global_min_se_for_method within_one_se one_se_selected
athanasius_epistles_data_bin_csv Binary greedy 9 4 200 10 0.00933333 0.00261996 0.866667 9.39167 24 0.0008 -0.3992 12 0.00833333 0.00290806 1 1
athanasius_epistles_data_bin_csv Binary prefix 7 94 200 10 0.0383333 0.00239598 0.641667 249.183 572.4 0.000276903 -0.0207757 7.4 0.0383333 0.00239598 1 1
athanasius_epistles_data_multistate_csv Multistate greedy 4 4 200 10 0.00533333 0.00249444 0.933333 17.65 19.625 0.001 -0.399 12 0.003 0.0023544 1 1
athanasius_epistles_data_multistate_csv Multistate prefix 5 194 200 10 0.046 0.00108866 0.516667 1022.07 1096.45 0.000283028 -0.00997338 7.1 0.046 0.00108866 1 1

Best aggregated rows

dataset dataset_label method subset_size_s ensemble_size_m candidate_library_size_K repeats mean_padic_loss se_padic_loss mean_exact_branch_accuracy mean_active_parameters_used mean_parameters_used mean_min_medoid_gap mean_min_stability_margin mean_unstable_folds global_min_loss_for_method global_min_se_for_method within_one_se one_se_selected
athanasius_epistles_data_multistate_csv Multistate greedy 8 27 200 10 0.003 0.0023544 0.958333 127.992 140.85 0.000767843 -0.0706607 7.6 0.003 0.0023544 1 0
athanasius_epistles_data_multistate_csv Multistate greedy 8 36 200 10 0.003 0.0023544 0.958333 177.45 197.25 0.000346689 -0.0537074 7.8 0.003 0.0023544 1 0
athanasius_epistles_data_multistate_csv Multistate greedy 8 37 200 10 0.003 0.0023544 0.958333 183.792 204.3 0.000623704 -0.0520079 7.7 0.003 0.0023544 1 0
athanasius_epistles_data_multistate_csv Multistate greedy 8 38 200 10 0.003 0.0023544 0.958333 189.942 211.5 0.000702961 -0.0505791 7.7 0.003 0.0023544 1 0
athanasius_epistles_data_multistate_csv Multistate greedy 8 39 200 10 0.003 0.0023544 0.958333 195.983 218.4 0.000488569 -0.0495114 7.8 0.003 0.0023544 1 0
athanasius_epistles_data_bin_csv Binary greedy 9 47 200 10 0.00833333 0.00290806 0.891667 75.725 180.833 0.00241815 -0.0392485 7.1 0.00833333 0.00290806 1 0
athanasius_epistles_data_bin_csv Binary greedy 9 45 200 10 0.00833333 0.00290806 0.891667 71.7917 171.833 0.00342205 -0.0400562 7 0.00833333 0.00290806 1 0
athanasius_epistles_data_bin_csv Binary greedy 9 46 200 10 0.00833333 0.00290806 0.891667 73.7417 176.25 0.00289219 -0.039661 7.1 0.00833333 0.00290806 1 0
athanasius_epistles_data_bin_csv Binary greedy 9 48 200 10 0.00833333 0.00290806 0.891667 77.8 184.917 0.00241815 -0.0383982 7.1 0.00833333 0.00290806 1 0
athanasius_epistles_data_bin_csv Binary greedy 9 49 200 10 0.00833333 0.00290806 0.891667 79.9083 189.083 0.00240926 -0.0375907 7.2 0.00833333 0.00290806 1 0
athanasius_epistles_data_bin_csv Binary prefix 7 95 200 10 0.0383333 0.00239598 0.641667 251.658 578.133 0.000386149 -0.0204472 7.4 0.0383333 0.00239598 1 0
athanasius_epistles_data_bin_csv Binary prefix 7 94 200 10 0.0383333 0.00239598 0.641667 249.183 572.4 0.000276903 -0.0207757 7.4 0.0383333 0.00239598 1 1
athanasius_epistles_data_bin_csv Binary prefix 7 102 200 10 0.0396667 0.00160631 0.641667 269.892 620.933 0.000372254 -0.0190452 7.4 0.0383333 0.00239598 1 0
athanasius_epistles_data_bin_csv Binary prefix 7 103 200 10 0.0396667 0.00160631 0.641667 272.183 626.6 0.000291183 -0.0189396 7.4 0.0383333 0.00239598 1 0
athanasius_epistles_data_bin_csv Binary prefix 7 98 200 10 0.04 0.00172133 0.633333 260.108 597.733 0.000338341 -0.0198637 7.5 0.0383333 0.00239598 1 0
athanasius_epistles_data_multistate_csv Multistate prefix 5 194 200 10 0.046 0.00108866 0.516667 1022.07 1096.45 0.000283028 -0.00997338 7.1 0.046 0.00108866 1 1
athanasius_epistles_data_multistate_csv Multistate prefix 4 172 200 10 0.051 0.000867806 0.391667 788.417 837.333 0.00016245 -0.0113982 7.1 0.046 0.00108866 0 0
athanasius_epistles_data_multistate_csv Multistate prefix 4 173 200 10 0.051 0.000867806 0.391667 793.058 842.292 0.000180157 -0.0113141 7.1 0.046 0.00108866 0 0
athanasius_epistles_data_multistate_csv Multistate prefix 4 176 200 10 0.051 0.000867806 0.391667 806.242 856.708 0.000190891 -0.0111085 7.1 0.046 0.00108866 0 0
athanasius_epistles_data_multistate_csv Multistate prefix 4 178 200 10 0.051 0.000867806 0.391667 815.533 866.583 0.000210203 -0.010963 7.1 0.046 0.00108866 0 0

Curve sample

dataset dataset_label method subset_size_s ensemble_size_m repeat seed candidate_library_size_K folds mean_padic_loss exact_branch_accuracy mean_models_available fallback_folds mean_parameters_used mean_active_parameters_used min_medoid_gap min_stability_margin unstable_folds selection_elapsed_seconds candidate_generation_elapsed_seconds estimated_generation_elapsed_to_m_seconds total_fixed_library_elapsed_seconds estimated_total_k_equals_m_elapsed_seconds
athanasius_epistles_data_bin_csv Binary prefix 1 1 1 20270503 200 12 0.36 0 1 0 2 1.5 0.04 -0.96 12 0.000160709 0.0418811 0.000209405 0.0420418 0.000370114
athanasius_epistles_data_bin_csv Binary prefix 1 2 1 20270503 200 12 0.32 0 2 0 4 3.16667 0 -0.666667 12 0.000242792 0.0418811 0.000418811 0.0421239 0.000661603
athanasius_epistles_data_bin_csv Binary prefix 1 3 1 20270503 200 12 0.32 0 3 0 6 4.33333 0 -0.5 12 0.0003185 0.0418811 0.000628216 0.0421996 0.000946716
athanasius_epistles_data_bin_csv Binary prefix 1 4 1 20270503 200 12 0.333333 0 4 0 8 5.58333 0 -0.4 12 0.000391834 0.0418811 0.000837622 0.0422729 0.00122946
athanasius_epistles_data_bin_csv Binary prefix 1 5 1 20270503 200 12 0.333333 0 5 0 10 7 0 -0.333333 12 0.000464084 0.0418811 0.00104703 0.0423452 0.00151111
athanasius_epistles_data_bin_csv Binary prefix 1 6 1 20270503 200 12 0.32 0 6 0 12 8.33333 0 -0.285714 12 0.000535792 0.0418811 0.00125643 0.0424169 0.00179222
athanasius_epistles_data_bin_csv Binary prefix 1 7 1 20270503 200 12 0.32 0 7 0 14 9.58333 0 -0.25 12 0.000606209 0.0418811 0.00146584 0.0424873 0.00207205
athanasius_epistles_data_bin_csv Binary prefix 1 8 1 20270503 200 12 0.32 0 8 0 16 10.75 0 -0.222222 12 0.000679417 0.0418811 0.00167524 0.0425605 0.00235466
athanasius_epistles_data_bin_csv Binary prefix 1 9 1 20270503 200 12 0.32 0 9 0 18 12.5833 0.00444444 -0.195556 12 0.00075025 0.0418811 0.00188465 0.0426313 0.0026349
athanasius_epistles_data_bin_csv Binary prefix 1 10 1 20270503 200 12 0.32 0 10 0 20 14.25 0 -0.181818 12 0.000821 0.0418811 0.00209405 0.0427021 0.00291505
athanasius_epistles_data_bin_csv Binary prefix 1 11 1 20270503 200 12 0.32 0 11 0 22 15.4167 0 -0.166667 12 0.000891209 0.0418811 0.00230346 0.0427723 0.00319467
athanasius_epistles_data_bin_csv Binary prefix 1 12 1 20270503 200 12 0.32 0 12 0 24 16.5 0 -0.153846 12 0.000960875 0.0418811 0.00251286 0.042842 0.00347374
athanasius_epistles_data_bin_csv Binary prefix 1 13 1 20270503 200 12 0.32 0 13 0 26 18.0833 0 -0.142857 12 0.00102992 0.0418811 0.00272227 0.042911 0.00375219
athanasius_epistles_data_bin_csv Binary prefix 1 14 1 20270503 200 12 0.32 0 13.9167 0 27.8333 19 0.00285714 -0.130476 12 0.00109892 0.0418811 0.00293168 0.04298 0.00403059
athanasius_epistles_data_bin_csv Binary prefix 1 15 1 20270503 200 12 0.32 0 14.9167 0 29.8333 20.75 0.00266667 -0.122333 12 0.00124187 0.0418811 0.00314108 0.043123 0.00438296
athanasius_epistles_data_bin_csv Binary prefix 1 16 1 20270503 200 12 0.32 0 15.9167 0 31.8333 22 0 -0.117647 12 0.00133204 0.0418811 0.00335049 0.0432131 0.00468253
athanasius_epistles_data_bin_csv Binary prefix 1 17 1 20270503 200 12 0.32 0 16.9167 0 33.8333 23.4167 0.00235294 -0.108758 12 0.00140687 0.0418811 0.00355989 0.043288 0.00496677
athanasius_epistles_data_bin_csv Binary prefix 1 18 1 20270503 200 12 0.32 0 17.9167 0 35.8333 24.6667 0 -0.105263 12 0.00148233 0.0418811 0.0037693 0.0433634 0.00525163
athanasius_epistles_data_bin_csv Binary prefix 1 19 1 20270503 200 12 0.32 0 18.9167 0 37.8333 26.3333 1.38778e-17 -0.1 12 0.00159171 0.0418811 0.0039787 0.0434728 0.00557041
athanasius_epistles_data_bin_csv Binary prefix 1 20 1 20270503 200 12 0.32 0 19.9167 0 39.8333 27.6667 0 -0.0952381 12 0.00171154 0.0418811 0.00418811 0.0435926 0.00589965
athanasius_epistles_data_bin_csv Binary prefix 1 21 1 20270503 200 12 0.32 0 20.9167 0 41.8333 29 0 -0.0909091 12 0.00178458 0.0418811 0.00439751 0.0436657 0.0061821
athanasius_epistles_data_bin_csv Binary prefix 1 22 1 20270503 200 12 0.32 0 21.9167 0 43.8333 30.25 0 -0.0869565 12 0.00185563 0.0418811 0.00460692 0.0437367 0.00646254
athanasius_epistles_data_bin_csv Binary prefix 1 23 1 20270503 200 12 0.32 0 22.8333 0 45.6667 31.1667 1.38778e-17 -0.0833333 12 0.00192575 0.0418811 0.00481632 0.0438068 0.00674207
athanasius_epistles_data_bin_csv Binary prefix 1 24 1 20270503 200 12 0.32 0 23.8333 0 47.6667 32.6667 0.00166667 -0.0783333 12 0.00199512 0.0418811 0.00502573 0.0438762 0.00702085
athanasius_epistles_data_bin_csv Binary prefix 1 25 1 20270503 200 12 0.32 0 24.8333 0 49.6667 34.1667 1.38778e-17 -0.0769231 12 0.00206442 0.0418811 0.00523514 0.0439455 0.00729955
athanasius_epistles_data_bin_csv Binary prefix 1 26 1 20270503 200 12 0.32 0 25.8333 0 51.6667 35.6667 0 -0.0740741 12 0.00213471 0.0418811 0.00544454 0.0440158 0.00757925
athanasius_epistles_data_bin_csv Binary prefix 1 27 1 20270503 200 12 0.32 0 26.8333 0 53.6667 37 0.00148148 -0.0699471 12 0.00220475 0.0418811 0.00565395 0.0440858 0.0078587
athanasius_epistles_data_bin_csv Binary prefix 1 28 1 20270503 200 12 0.32 0 27.8333 0 55.6667 38.4167 0.00142857 -0.0675369 12 0.00227408 0.0418811 0.00586335 0.0441552 0.00813744
athanasius_epistles_data_bin_csv Binary prefix 1 29 1 20270503 200 12 0.32 0 28.8333 0 57.6667 39.5833 0 -0.0666667 12 0.00234317 0.0418811 0.00607276 0.0442243 0.00841592
athanasius_epistles_data_bin_csv Binary prefix 1 30 1 20270503 200 12 0.32 0 29.8333 0 59.6667 41.1667 0 -0.0645161 12 0.00241233 0.0418811 0.00628216 0.0442934 0.0086945