Ultrametric Diagnostics
Generated by scripts/run_ultrametric_diagnostics.py.
Scores are exploratory: they report how often observed triplets satisfy the ultrametric condition, not whether a historical stemma has been proved.
athanasius_epistles_data_bin_csv_hamming
- Items:
12 - Ultrametricity score:
0.1409 - Recorded violations:
189 - MAE to average-linkage cophenetic ultrametric:
0.0538 - Scatter plot:
outputs/figures/athanasius_epistles_data_bin_csv_hamming_distance_vs_ultrametric.png - Largest recorded violation:
Ath,P46,M2423with gap0.3056
athanasius_epistles_data_bin_csv_jaccard
- Items:
12 - Ultrametricity score:
0.3091 - Recorded violations:
152 - MAE to average-linkage cophenetic ultrametric:
0.0479 - Scatter plot:
outputs/figures/athanasius_epistles_data_bin_csv_jaccard_distance_vs_ultrametric.png - Largest recorded violation:
P46,A,M1739with gap0.2544
athanasius_epistles_data_bin_csv_simple_matching
- Items:
12 - Ultrametricity score:
0.1409 - Recorded violations:
189 - MAE to average-linkage cophenetic ultrametric:
0.0538 - Scatter plot:
outputs/figures/athanasius_epistles_data_bin_csv_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
Ath,P46,M2423with gap0.3056
athanasius_epistles_data_diss_csv
- Items:
12 - Ultrametricity score:
0.1182 - Recorded violations:
194 - MAE to average-linkage cophenetic ultrametric:
0.2539 - Scatter plot:
outputs/figures/athanasius_epistles_data_diss_csv_distance_vs_ultrametric.png - Largest recorded violation:
A,D,Gwith gap1.5120
athanasius_epistles_data_multistate_csv_hamming
- Items:
12 - Ultrametricity score:
0.2318 - Recorded violations:
169 - MAE to average-linkage cophenetic ultrametric:
0.0652 - Scatter plot:
outputs/figures/athanasius_epistles_data_multistate_csv_hamming_distance_vs_ultrametric.png - Largest recorded violation:
P46,M1739,M2423with gap0.3333
athanasius_epistles_data_multistate_csv_simple_matching
- Items:
12 - Ultrametricity score:
0.2318 - Recorded violations:
169 - MAE to average-linkage cophenetic ultrametric:
0.0652 - Scatter plot:
outputs/figures/athanasius_epistles_data_multistate_csv_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
P46,M1739,M2423with gap0.3333
donker_ath_1cor
- Items:
21 - Ultrametricity score:
0.0707 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0596 - Scatter plot:
outputs/figures/donker_ath_1cor_distance_vs_ultrametric.png - Largest recorded violation:
U1,U1C,Kwith gap0.3068
donker_ath_1cor_hamming
- Items:
21 - Ultrametricity score:
0.0707 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0596 - Scatter plot:
outputs/figures/donker_ath_1cor_hamming_distance_vs_ultrametric.png - Largest recorded violation:
U1,U1C,Kwith gap0.3068
donker_ath_1cor_simple_matching
- Items:
21 - Ultrametricity score:
0.0707 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0596 - Scatter plot:
outputs/figures/donker_ath_1cor_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
U1,U1C,Kwith gap0.3068
donker_ath_2cor_titus
- Items:
21 - Ultrametricity score:
0.0346 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0446 - Scatter plot:
outputs/figures/donker_ath_2cor_titus_distance_vs_ultrametric.png - Largest recorded violation:
A,U49,M223with gap0.2346
donker_ath_2cor_titus_hamming
- Items:
21 - Ultrametricity score:
0.0338 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0451 - Scatter plot:
outputs/figures/donker_ath_2cor_titus_hamming_distance_vs_ultrametric.png - Largest recorded violation:
P46,M876,M1739with gap0.2444
donker_ath_2cor_titus_simple_matching
- Items:
21 - Ultrametricity score:
0.0338 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0451 - Scatter plot:
outputs/figures/donker_ath_2cor_titus_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
P46,M876,M1739with gap0.2444
donker_ath_acts_13_28
- Items:
24 - Ultrametricity score:
0.1724 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0498 - Scatter plot:
outputs/figures/donker_ath_acts_13_28_distance_vs_ultrametric.png - Largest recorded violation:
P74,U44,M614with gap0.3077
donker_ath_acts_13_28_hamming
- Items:
24 - Ultrametricity score:
0.1695 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0483 - Scatter plot:
outputs/figures/donker_ath_acts_13_28_hamming_distance_vs_ultrametric.png - Largest recorded violation:
P74,U44,M614with gap0.3200
donker_ath_acts_13_28_simple_matching
- Items:
24 - Ultrametricity score:
0.1695 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0483 - Scatter plot:
outputs/figures/donker_ath_acts_13_28_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
P74,U44,M614with gap0.3200
donker_ath_acts_1_12
- Items:
22 - Ultrametricity score:
0.1786 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0720 - Scatter plot:
outputs/figures/donker_ath_acts_1_12_distance_vs_ultrametric.png - Largest recorded violation:
A,B,Ewith gap0.3680
donker_ath_acts
- Items:
24 - Ultrametricity score:
0.0786 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0440 - Scatter plot:
outputs/figures/donker_ath_acts_distance_vs_ultrametric.png - Largest recorded violation:
B,M383,M1739with gap0.2857
donker_ath_acts_hamming
- Items:
24 - Ultrametricity score:
0.0810 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0453 - Scatter plot:
outputs/figures/donker_ath_acts_hamming_distance_vs_ultrametric.png - Largest recorded violation:
B,M383,M1739with gap0.3000
donker_ath_acts_simple_matching
- Items:
24 - Ultrametricity score:
0.0810 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0453 - Scatter plot:
outputs/figures/donker_ath_acts_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
B,M383,M1739with gap0.3000
donker_ath_catholicepistles
- Items:
14 - Ultrametricity score:
0.4533 - Recorded violations:
199 - MAE to average-linkage cophenetic ultrametric:
0.0531 - Scatter plot:
outputs/figures/donker_ath_catholicepistles_distance_vs_ultrametric.png - Largest recorded violation:
Ath,B,M1739with gap0.3330
donker_ath_catholicepistles_hamming
- Items:
18 - Ultrametricity score:
0.3431 - Recorded violations:
536 - MAE to average-linkage cophenetic ultrametric:
0.0762 - Scatter plot:
outputs/figures/donker_ath_catholicepistles_hamming_distance_vs_ultrametric.png - Largest recorded violation:
P72,C,U44with gap0.4167
donker_ath_catholicepistles_simple_matching
- Items:
18 - Ultrametricity score:
0.3431 - Recorded violations:
536 - MAE to average-linkage cophenetic ultrametric:
0.0762 - Scatter plot:
outputs/figures/donker_ath_catholicepistles_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
P72,C,U44with gap0.4167
donker_ath_heb
- Items:
18 - Ultrametricity score:
0.1017 - Recorded violations:
733 - MAE to average-linkage cophenetic ultrametric:
0.0563 - Scatter plot:
outputs/figures/donker_ath_heb_distance_vs_ultrametric.png - Largest recorded violation:
C,P,M223with gap0.3327
donker_ath_paulineepistles
- Items:
21 - Ultrametricity score:
0.0098 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0430 - Scatter plot:
outputs/figures/donker_ath_paulineepistles_distance_vs_ultrametric.png - Largest recorded violation:
P46,U1C,M876with gap0.2461
donker_ath_paulineepistles_hamming
- Items:
21 - Ultrametricity score:
0.0098 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0428 - Scatter plot:
outputs/figures/donker_ath_paulineepistles_hamming_distance_vs_ultrametric.png - Largest recorded violation:
P46,A,U49with gap0.2466
donker_ath_paulineepistles_simple_matching
- Items:
21 - Ultrametricity score:
0.0098 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0428 - Scatter plot:
outputs/figures/donker_ath_paulineepistles_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
P46,A,U49with gap0.2466
donker_ath_rom
- Items:
19 - Ultrametricity score:
0.1579 - Recorded violations:
816 - MAE to average-linkage cophenetic ultrametric:
0.0519 - Scatter plot:
outputs/figures/donker_ath_rom_distance_vs_ultrametric.png - Largest recorded violation:
K,P,M33with gap0.2910
donker_ath_rom_hamming
- Items:
21 - Ultrametricity score:
0.1556 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0615 - Scatter plot:
outputs/figures/donker_ath_rom_hamming_distance_vs_ultrametric.png - Largest recorded violation:
Ath,P46,Lwith gap0.3750
donker_ath_rom_simple_matching
- Items:
21 - Ultrametricity score:
0.1556 - Recorded violations:
1000 - MAE to average-linkage cophenetic ultrametric:
0.0615 - Scatter plot:
outputs/figures/donker_ath_rom_simple_matching_distance_vs_ultrametric.png - Largest recorded violation:
Ath,P46,Lwith gap0.3750